Looks like my manual reply worked and got included in the thread, so I'll just do the same again
Pedro said:
>In Owncloud, after loading the PDF, just click on the button on the >top left (Toggle Sidebar) and then on the Sidebar click on the second >button from the >top left (Show Document Outline). Evince should have >some option to display bookmarks/outline...
Hm, strange. The first time I viewed and downloaded the file they weren't there. Anyway, thanks for the bookmarks, they're awesome! The fact that they have the capitalization and everything suggests that you made them by copying and pasting and that it was indeed a very quick process.
I'm jealous of that pdf software, I'll continue to search for alternatives here...